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Heterogeneous molecular packing and water effects on the mechanical behaviour of silk-inspired β-sheet crystallites: A steered molecular dynamics study

dc.contributor.authorUguz, Cem
dc.contributor.authorAkdere, Unsal
dc.contributor.authorTasseven, Cetin
dc.date.accessioned2026-06-27T15:21:21Z
dc.date.issued2025
dc.description.abstractBombyx-mori silk fibroin (SF) features outstanding mechanical properties, arising from its beta-sheet content. This study investigates the effect of heterogenous molecular packing and water environment on the mechanical behaviour of silk-inspired beta-sheet crystallites using steered molecular dynamics (SMD) simulation technique. Two distinct antipolar antiparallel crystallite models were constructed based on experimental Silk II structures, differing intermolecular packing arrangements, instead of widely used highly ordered theoretical model of beta-sheet structure. Results of pull-out simulations of six different beta-chains reveal that heterogeneous molecular packing introduces location-dependent mechanical strength, which cannot be predicted based on chain region (core vs. surface) only. Water selectively weakens the surface and corner chains while either ineffective or slightly enhances the strength via hydrogen bond bridges formed prior to ultimate rupture. It also smoothens the stick-slip motion and expedites complete dissociation. Our finding provides atomistic insights into structure-mechanical relationship silk fibroin and highlight the critical role of packing heterogeneity and aqueous environment in tuning silk-based materials for biomedical and engineering applications.en
dc.description.urihttps://doi.org/10.1016/j.commatsci.2025.114053
dc.identifier.doi10.1016/j.commatsci.2025.114053
dc.identifier.eissn1879-0801
dc.identifier.issn0927-0256
dc.identifier.urihttps://hdl.handle.net/20.500.14981/70119
dc.identifier.volume258
dc.identifier.wos001520052500001
dc.language.isoeng
dc.publisherELSEVIER
dc.relation.ispartofCOMPUTATIONAL MATERIALS SCIENCE
dc.subjectbeta-sheet crystals
dc.subjectSteered molecular dynamics
dc.subjectMechanical behavior
dc.subjectPacking heterogeneity
dc.subjectWater effect
dc.subjectBOMBYX-MORI SILK
dc.subjectSPIDER SILK
dc.subjectSTRUCTURAL CHARACTERISTICS
dc.subjectSTRENGTH
dc.subjectFIBROIN
dc.subjectTOUGHNESS
dc.subjectNANOSTRUCTURE
dc.subjectPROTEIN
dc.subjectCHAIN
dc.subjectMaterials Science
dc.titleHeterogeneous molecular packing and water effects on the mechanical behaviour of silk-inspired β-sheet crystallites: A steered molecular dynamics study
dc.typeArticle
dspace.entity.typePublication
local.import.sourceWOS

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